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Error Executing Command Java.util.nosuchelementexception

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I really think you should just use the -XL syntax that I suggested above. How can I correct it in geoserver ? When stating a theorem in textbook, use the word "For all" or "Let"? Can you point me to where I can read more about this kind of issues and how to fix them? navigate to this website

How can I correct it ? Terms and Rules Curse Enjoy the game Not a Member? Spongy Chests Extras:We have tried this with other versions of SpongeForge and Forge but still end up with the same error report.No Crash report generated. Geraldine Van der Auwera, PhD 0 · Share on Twitter thomas_w MunichPosts: 17Member ✭ August 2012 Of course, I always try to do that. https://bukkit.org/threads/java-util-nosuchelementexception-help.354763/

Error Executing Command Java.util.nosuchelementexception

Will it likely break stuff, or should it be pretty much self contained? Take the last interval that was printed before the error happened, and re-run with -L interval-(interval+1,000,000) see if the error occurs. is this configuration wrong ?

Run with --info or --debug option to get more log output. Now, the code is setup in a way that makes it hard to debug the original exception... My wfs get capabilities url is this WFSDataStoreFactory:GET_CAPABILITIES_URL: http://localhost:8080/geoserver/ows?service=WFS&VERSION=1.0.0&request=GetCapabilities is this url wrong ? is this thing even working?

I was able to reproduce the error by skipping all "normal" chromosomes. Jody, do you konw why in the world do we have this code: protected Iterator openIterator() throws IOException { try { FeatureWriter writer = writer(); if(writer != null) { return new I just need to type in something :)) Also I had added this line: mainClassName = ' ' I hope I am doing things right and it is not just a http://stackoverflow.com/questions/24249917/exception-in-thread-main-java-util-nosuchelementexception-numerous-errors Thread Status: Not open for further replies.

And use lowercase if it's not a constant. –Einar Jun 16 '14 at 18:42 | show 9 more comments 4 Answers 4 active oldest votes up vote 1 down vote You You can then create a debug bam for me with PrintReads using -L chrY. Browse other questions tagged java java.util.scanner or ask your own question. I'll try both of them (i.e.

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The error below has nothing to do with GeoServer, at least not directly. > java.util.NoSuchElementException: Could not aquire feature:java.io.IOException: java.net.UnknownHostException: http://www.openplans.org >         at org.geotools.data.store.NoContentIterator.next(NoContentIterator.java:56) ~[gt-main-2.6.3.jar:na] >        http://gatkforums.broadinstitute.org/gatk/discussion/1257/nosuchelementexception-in-reducereads Removing the "dynamic.classpath" property below from the workspace.xml (or setting it to false) fixed the problem. ... If it happens again should be quicker than Error Executing Command Java.util.nosuchelementexception I apologize if my formatting is off, this is my first post. You seem to have CSS turned off.

Mauricio Carneiro, PhD http://www.broadinstitute.org/~carneiro/ 0 · Share on Twitter thomas_w MunichPosts: 17Member ✭ August 2012 Of course, but how exactly can I do that? useful reference The error below has nothing to do with GeoServer, at least not directly. > java.util.NoSuchElementException: Could not aquire feature:java.io.IOException: java.net.UnknownHostException: http://www.openplans.org >         at org.geotools.data.store.NoContentIterator.next(NoContentIterator.java:56) ~[gt-main-2.6.3.jar:na] >        How can I correct it in geoserver ? It should wait if there's no input I think.

Exception in thread "main" java.util.NoSuchElementException at java.util.Scanner.throwFor(Scanner.java:907) at java.util.Scanner.next(Scanner.java:1530) at java.util.Scanner.nextInt(Scanner.java:2160) at java.util.Scanner.nextInt(Scanner.java:2119) at commissioncalculationprogram.calculate.main(calculate.java:14) Using the suggestions provided. Not from within Netbeans. –Alvin Thompson Jun 16 '14 at 20:01 @Dwill34: Also, what OS are you running on, and from the console, when you run java -version what Also is your project open sourced? http://invictanetworks.net/error-executing/error-executing-usr-openv-java-jre-bin-java.html Can you create a file with the region that causes the error (using print reads) and send it to me to debug?

You can do the following: run{ standardInput = System.in } After adding it as the last line of my build.gradle and running gradle the error is still the same though: Made with Bootstrap. It's standard UCSC hg19, but chromosomes are in a different order than in the reference file from the GATK resource bundle. 0 · Share on Twitter Carneiro Posts: 274Administrator, Dev admin

is this configuration wrong ?

Please ignore thomas_w_reducereads_exception.tar, the transmission failed at one point and I wasn't able to overwrite it. 0 · Share on Twitter JLand52 Posts: 1Member ✭ August 2012 I am having a I'm asking because it always takes about 8h to run it on the file where I encountered the problem and if there are no changes there won't be a solution, I MMO-Champion MMO-Champion Keep ahead with the champions of WoW coverage. niccolomineo (Niccolò Mineo) 2016-01-13 22:59:23 UTC #5 Picking up on your suggestion, I found this Stackoverflow topic and a post on this very forum where this solution is given: Per default

Please help! Your bam had reads that were soft-clipped past the boundaries of the chromosome. The Scanner and System.in are built-in JDK things. get redirected here Atlassian current community chat Stack Overflow Meta Stack Overflow your communities Sign up or log in to customize your list.

Looking for a term like "fundamentalism", but without a religious connotation Is there any job that can't be automated? Ok, so I'll run it for all the chromosomes and see what happens. 0 · Share on Twitter Carneiro Posts: 274Administrator, Dev admin August 2012 X is only 155,270,560 bases long. In any case you should always try to work with the latest version -- we have a very fast-paced development process and have bug fixes pushed in all the time. Sign In Register Categories Recent Discussions Activity Best Of...

Isn't that more expensive than an elevated system? How would one go about doing it? How to prevent contributors from claiming copyright on my LGPL-released software? It looks like the error occurs on GL000226.1.

The stack trace is slightly different though (probably different JRE). I believe it might have something to do with the Scanner, but I am not so sure. Please let me know if you want me to upload a bam file. Could you explain it to me please? :) Yes of course I can provide more of my code, the java program one right? –Celine Oct 14 '13 at 10:40

Then System.in will be the regular console input. How is the Heartbleed exploit even possible? The scanner input method uses a buffer to capture and store the data entered. Jody On 09/09/2010, at 1:14 AM, Roman Isitua wrote: Hello everyone, I am developing an application that uses the geomajas web gis framework.

Can't do anything to fix. Is it possible to upgrade the Karaf version within Geronimo? Permalink 0 Peter Youssef September 11, 2016 06:48 Experiencing the same problem. Especially with v2.0 being a brand new release and ReduceReads being a new tool, things are moving very fast -- and as a result we only provide support for the latest

My data uses the topp workspace. This should be very small.